| nextflow-io/nextflow |
2,447 |
|
0 |
16 |
about 2 years ago |
250 |
November 24, 2023 |
336 |
apache-2.0 |
Groovy |
| A DSL for data-driven computational pipelines |
| ropensci/drake |
1,332 |
|
15 |
1 |
over 2 years ago |
47 |
November 06, 2023 |
0 |
gpl-3.0 |
R |
| An R-focused pipeline toolkit for reproducibility and high-performance computing |
| ropensci/targets |
837 |
|
0 |
0 |
about 2 years ago |
0 |
|
0 |
other |
R |
| Function-oriented Make-like declarative workflows for R |
| nf-core/sarek |
299 |
|
0 |
0 |
about 2 years ago |
0 |
|
180 |
mit |
Nextflow |
| Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing |
| sunbeam-labs/sunbeam |
157 |
|
0 |
0 |
about 2 years ago |
8 |
August 16, 2025 |
14 |
|
HTML |
| A robust, extensible metagenomics pipeline |
| minerva-ml/steppy |
136 |
|
5 |
0 |
over 7 years ago |
16 |
November 23, 2018 |
16 |
mit |
Python |
| Lightweight, Python library for fast and reproducible experimentation :microscope: |
| vanheeringen-lab/seq2science |
132 |
|
0 |
0 |
over 2 years ago |
0 |
|
18 |
mit |
Python |
| Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data. |
| SciLifeLab/Sarek |
126 |
|
0 |
0 |
about 6 years ago |
0 |
|
|
mit |
Nextflow |
| Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing |
| wlandau/targets-tutorial |
90 |
|
0 |
0 |
over 2 years ago |
0 |
|
0 |
other |
R |
| Short course on the targets R package |
| fmalmeida/bacannot |
85 |
|
0 |
0 |
over 2 years ago |
0 |
|
10 |
gpl-3.0 |
Nextflow |
| Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app. |
