| galaxyproject/galaxy |
1,211 |
|
2 |
23 |
about 2 years ago |
30 |
December 08, 2023 |
2,169 |
other |
Python |
| Data intensive science for everyone. |
| nf-core/rnaseq |
718 |
|
0 |
0 |
about 2 years ago |
0 |
|
90 |
mit |
Nextflow |
| RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control. |
| etal/cnvkit |
435 |
|
9 |
0 |
over 2 years ago |
50 |
February 24, 2023 |
278 |
other |
Python |
| Copy number variant detection from targeted DNA sequencing |
| nf-core/sarek |
299 |
|
0 |
0 |
about 2 years ago |
0 |
|
180 |
mit |
Nextflow |
| Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing |
| r3fang/SnapATAC |
227 |
|
0 |
0 |
about 4 years ago |
0 |
|
135 |
gpl-3.0 |
R |
| Analysis Pipeline for Single Cell ATAC-seq |
| ugeneunipro/ugene |
190 |
|
0 |
0 |
about 2 years ago |
0 |
|
6 |
gpl-2.0 |
C++ |
| UGENE is free open-source cross-platform bioinformatics software |
| sunbeam-labs/sunbeam |
157 |
|
0 |
0 |
about 2 years ago |
8 |
August 16, 2025 |
14 |
|
HTML |
| A robust, extensible metagenomics pipeline |
| nf-core/ampliseq |
141 |
|
0 |
0 |
about 2 years ago |
0 |
|
15 |
mit |
Nextflow |
| Amplicon sequencing analysis workflow using DADA2 and QIIME2 |
| sequana/sequana |
136 |
|
6 |
11 |
over 2 years ago |
111 |
March 01, 2026 |
12 |
bsd-3-clause |
Jupyter Notebook |
| Sequana: a set of Snakemake NGS pipelines |
| twbattaglia/RNAseq-workflow |
133 |
|
0 |
0 |
about 9 years ago |
0 |
|
1 |
|
R |
| A repository for setting up a RNAseq workflow |
