| google/deepvariant |
2,978 |
|
0 |
0 |
over 2 years ago |
0 |
|
8 |
bsd-3-clause |
Python |
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. |
| broadinstitute/gatk |
1,549 |
|
0 |
2 |
about 2 years ago |
46 |
March 16, 2023 |
1,299 |
other |
Java |
| Official code repository for GATK versions 4 and up |
| galaxyproject/galaxy |
1,211 |
|
2 |
23 |
about 2 years ago |
30 |
December 08, 2023 |
2,169 |
other |
Python |
| Data intensive science for everyone. |
| samtools/htsjdk |
271 |
|
170 |
87 |
over 2 years ago |
78 |
October 13, 2023 |
303 |
|
Java |
| A Java API for high-throughput sequencing data (HTS) formats. |
| chanzuckerberg/shasta |
269 |
|
0 |
0 |
over 3 years ago |
0 |
|
0 |
other |
C++ |
| [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads |
| BenLangmead/comp-genomics-class |
236 |
|
0 |
0 |
over 4 years ago |
0 |
|
4 |
gpl-2.0 |
Jupyter Notebook |
| Code and examples for JHU Computational Genomics class |
| a-slide/pycoQC |
213 |
|
0 |
0 |
over 2 years ago |
50 |
December 16, 2020 |
14 |
gpl-3.0 |
Python |
| pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy) |
| ugeneunipro/ugene |
190 |
|
0 |
0 |
about 2 years ago |
0 |
|
6 |
gpl-2.0 |
C++ |
| UGENE is free open-source cross-platform bioinformatics software |
| nextstrain/nextclade |
190 |
|
0 |
2 |
about 2 years ago |
52 |
April 27, 2022 |
154 |
mit |
TypeScript |
| Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement |
| igordot/genomics |
154 |
|
0 |
0 |
over 3 years ago |
0 |
|
2 |
|
R |
| A collection of scripts and notes related to genomics and bioinformatics |
