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The Top 10 Ngs Open Source Projects

Open source projects categorized as Ngs

Categories > Science > Ngs

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google/deepvariant ⭐ 2,978

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

dependent packages 0 total releases 0 most recent commit over 2 years ago

OpenGene/fastp ⭐ 1,602

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

dependent packages 0 total releases 0 most recent commit over 2 years ago

broadinstitute/gatk ⭐ 1,549

Official code repository for GATK versions 4 and up

dependent packages 0 total releases 0 most recent commit about 2 years ago

galaxyproject/galaxy ⭐ 1,211

Data intensive science for everyone.

dependent packages 0 total releases 0 most recent commit about 2 years ago

ncbi/sra-tools ⭐ 1,015

SRA Tools

dependent packages 0 total releases 0 most recent commit about 2 years ago

samtools/htslib ⭐ 744

C library for high-throughput sequencing data formats

dependent packages 0 total releases 0 most recent commit about 2 years ago

deeptools/deepTools ⭐ 624

Tools to process and analyze deep sequencing data.

dependent packages 0 total releases 0 most recent commit over 2 years ago

flowhub-team/awesome-omics ⭐ 536

A collection of awesome things regarding all omics.

dependent packages 0 total releases 0 most recent commit about 2 years ago

lindenb/jvarkit ⭐ 440

Java utilities for Bioinformatics

dependent packages 0 total releases 0 most recent commit over 2 years ago

maxplanck-ie/snakepipes ⭐ 359

Customizable workflows based on snakemake and python for the analysis of NGS data

dependent packages 0 total releases 0 most recent commit about 2 years ago

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