| google/deepvariant |
2,978 |
|
0 |
0 |
over 2 years ago |
0 |
|
8 |
bsd-3-clause |
Python |
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. |
| OpenGene/fastp |
1,602 |
|
0 |
0 |
over 2 years ago |
1 |
December 15, 2021 |
309 |
mit |
C++ |
| An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...) |
| broadinstitute/gatk |
1,549 |
|
0 |
2 |
about 2 years ago |
46 |
March 16, 2023 |
1,299 |
other |
Java |
| Official code repository for GATK versions 4 and up |
| galaxyproject/galaxy |
1,211 |
|
2 |
23 |
about 2 years ago |
30 |
December 08, 2023 |
2,169 |
other |
Python |
| Data intensive science for everyone. |
| ncbi/sra-tools |
1,015 |
|
0 |
0 |
about 2 years ago |
1 |
March 03, 2021 |
83 |
other |
C |
| SRA Tools |
| samtools/htslib |
744 |
|
0 |
1 |
about 2 years ago |
11 |
June 14, 2023 |
160 |
other |
C |
| C library for high-throughput sequencing data formats |
| deeptools/deepTools |
624 |
|
0 |
0 |
over 2 years ago |
0 |
|
127 |
other |
Python |
| Tools to process and analyze deep sequencing data. |
| flowhub-team/awesome-omics |
536 |
|
0 |
0 |
about 2 years ago |
0 |
|
0 |
mit |
|
| A collection of awesome things regarding all omics. |
| lindenb/jvarkit |
440 |
|
0 |
0 |
over 2 years ago |
0 |
|
52 |
other |
Java |
| Java utilities for Bioinformatics |
| maxplanck-ie/snakepipes |
359 |
|
0 |
0 |
about 2 years ago |
0 |
|
34 |
mit |
Python |
| Customizable workflows based on snakemake and python for the analysis of NGS data |
