| google/deepvariant |
2,978 |
|
0 |
0 |
over 2 years ago |
0 |
|
8 |
bsd-3-clause |
Python |
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. |
| broadinstitute/gatk |
1,549 |
|
0 |
2 |
about 2 years ago |
46 |
March 16, 2023 |
1,299 |
other |
Java |
| Official code repository for GATK versions 4 and up |
| galaxyproject/galaxy |
1,211 |
|
2 |
23 |
about 2 years ago |
30 |
December 08, 2023 |
2,169 |
other |
Python |
| Data intensive science for everyone. |
| crazyhottommy/getting-started-with-genomics-tools-and-resources |
991 |
|
0 |
0 |
about 2 years ago |
0 |
|
1 |
|
Shell |
| Unix, R and python tools for genomics and data science |
| bigdatagenomics/adam |
966 |
|
20 |
17 |
about 2 years ago |
14 |
December 16, 2020 |
35 |
apache-2.0 |
Scala |
| ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed. |
| deeptools/deepTools |
624 |
|
0 |
0 |
over 2 years ago |
0 |
|
127 |
other |
Python |
| Tools to process and analyze deep sequencing data. |
| nf-core/sarek |
299 |
|
0 |
0 |
about 2 years ago |
0 |
|
180 |
mit |
Nextflow |
| Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing |
| fulcrumgenomics/fgbio |
292 |
|
0 |
0 |
about 2 years ago |
16 |
May 16, 2023 |
110 |
mit |
Scala |
| Tools for working with genomic and high throughput sequencing data. |
| samtools/htsjdk |
271 |
|
170 |
87 |
over 2 years ago |
78 |
October 13, 2023 |
303 |
|
Java |
| A Java API for high-throughput sequencing data (HTS) formats. |
| ACEnglish/truvari |
268 |
|
0 |
0 |
about 2 years ago |
23 |
August 07, 2023 |
0 |
mit |
Python |
| Structural variant toolkit for VCFs |
