| broadinstitute/picard |
914 |
|
17 |
12 |
about 2 years ago |
176 |
November 14, 2023 |
224 |
mit |
Java |
| A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. |
| samtools/htslib |
744 |
|
0 |
1 |
about 2 years ago |
11 |
June 14, 2023 |
160 |
other |
C |
| C library for high-throughput sequencing data formats |
| samtools/htsjdk |
271 |
|
170 |
87 |
over 2 years ago |
78 |
October 13, 2023 |
303 |
|
Java |
| A Java API for high-throughput sequencing data (HTS) formats. |
| ACEnglish/truvari |
268 |
|
0 |
0 |
about 2 years ago |
23 |
August 07, 2023 |
0 |
mit |
Python |
| Structural variant toolkit for VCFs |
| vibansal/HapCUT2 |
165 |
|
0 |
0 |
over 3 years ago |
0 |
|
15 |
bsd-2-clause |
C |
| software tools for haplotype assembly from sequence data |
| igordot/genomics |
154 |
|
0 |
0 |
over 3 years ago |
0 |
|
2 |
|
R |
| A collection of scripts and notes related to genomics and bioinformatics |
| parklab/NGSCheckMate |
106 |
|
0 |
0 |
over 2 years ago |
0 |
|
24 |
mit |
Python |
| Software program for checking sample matching for NGS data |
| dnanexus/parliament2 |
83 |
|
0 |
0 |
over 5 years ago |
0 |
|
30 |
apache-2.0 |
Python |
| Runs a combination of tools to generate structural variant calls on whole-genome sequencing data |
| zstephens/neat-genreads |
72 |
|
0 |
0 |
over 4 years ago |
0 |
|
25 |
other |
Python |
| NEAT read simulation tools |
| OpenGene/OpenGene.jl |
61 |
|
0 |
0 |
over 3 years ago |
0 |
|
8 |
other |
Julia |
| (No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia |
