| google/deepvariant |
2,978 |
|
0 |
0 |
over 2 years ago |
0 |
|
8 |
bsd-3-clause |
Python |
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. |
| OpenGene/fastp |
1,602 |
|
0 |
0 |
over 2 years ago |
1 |
December 15, 2021 |
309 |
mit |
C++ |
| An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...) |
| broadinstitute/gatk |
1,549 |
|
0 |
2 |
about 2 years ago |
46 |
March 16, 2023 |
1,299 |
other |
Java |
| Official code repository for GATK versions 4 and up |
| galaxyproject/galaxy |
1,211 |
|
2 |
23 |
about 2 years ago |
30 |
December 08, 2023 |
2,169 |
other |
Python |
| Data intensive science for everyone. |
| samtools/htslib |
744 |
|
0 |
1 |
about 2 years ago |
11 |
June 14, 2023 |
160 |
other |
C |
| C library for high-throughput sequencing data formats |
| deeptools/deepTools |
624 |
|
0 |
0 |
over 2 years ago |
0 |
|
127 |
other |
Python |
| Tools to process and analyze deep sequencing data. |
| fulcrumgenomics/fgbio |
292 |
|
0 |
0 |
about 2 years ago |
16 |
May 16, 2023 |
110 |
mit |
Scala |
| Tools for working with genomic and high throughput sequencing data. |
| samtools/htsjdk |
271 |
|
170 |
87 |
over 2 years ago |
78 |
October 13, 2023 |
303 |
|
Java |
| A Java API for high-throughput sequencing data (HTS) formats. |
| sortmerna/sortmerna |
209 |
|
0 |
0 |
over 2 years ago |
0 |
|
42 |
gpl-3.0 |
C++ |
| SortMeRNA: next-generation sequence filtering and alignment tool |
| ugeneunipro/ugene |
190 |
|
0 |
0 |
about 2 years ago |
0 |
|
6 |
gpl-2.0 |
C++ |
| UGENE is free open-source cross-platform bioinformatics software |
