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The Top 10 Sequencing Open Source Projects

Open source projects categorized as Sequencing
Categories  > Science  > Sequencing
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google/deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
dependent packages 0 total releases 0 most recent commit over 2 years ago
OpenGene/fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
dependent packages 0 total releases 0 most recent commit over 2 years ago
broadinstitute/gatk ⭐ 1,549
Official code repository for GATK versions 4 and up
dependent packages 0 total releases 0 most recent commit about 2 years ago
samtools/samtools ⭐ 1,496
Tools (written in C using htslib) for manipulating next-generation sequencing data
dependent packages 0 total releases 0 most recent commit about 2 years ago
nextstrain/ncov ⭐ 1,348
Nextstrain build for novel coronavirus SARS-CoV-2
dependent packages 0 total releases 0 most recent commit about 2 years ago
galaxyproject/galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 0 total releases 0 most recent commit about 2 years ago
crazyhottommy/getting-started-with-genomics-tools-and-resources ⭐ 991
Unix, R and python tools for genomics and data science
dependent packages 0 total releases 0 most recent commit about 2 years ago
bigdatagenomics/adam ⭐ 966
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
dependent packages 0 total releases 0 most recent commit about 2 years ago
broadinstitute/picard ⭐ 914
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
dependent packages 0 total releases 0 most recent commit about 2 years ago
ablab/spades ⭐ 903
SPAdes Genome Assembler
dependent packages 0 total releases 0 most recent commit 2 months ago
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