| biopython/biopython |
3,918 |
|
1,465 |
1,373 |
about 2 years ago |
58 |
February 13, 2023 |
545 |
other |
Python |
| Official git repository for Biopython (originally converted from CVS) |
| google/deepvariant |
2,978 |
|
0 |
0 |
over 2 years ago |
0 |
|
8 |
bsd-3-clause |
Python |
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. |
| broadinstitute/gatk |
1,549 |
|
0 |
2 |
about 2 years ago |
46 |
March 16, 2023 |
1,299 |
other |
Java |
| Official code repository for GATK versions 4 and up |
| galaxyproject/galaxy |
1,211 |
|
2 |
23 |
about 2 years ago |
30 |
December 08, 2023 |
2,169 |
other |
Python |
| Data intensive science for everyone. |
| dib-lab/khmer |
729 |
|
21 |
7 |
over 3 years ago |
18 |
December 15, 2021 |
341 |
other |
Python |
| In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more |
| google/nucleus |
675 |
|
0 |
2 |
over 4 years ago |
18 |
August 31, 2021 |
1 |
other |
C++ |
| Python and C++ code for reading and writing genomics data. |
| bebop/poly |
620 |
|
0 |
0 |
about 2 years ago |
0 |
|
32 |
mit |
Go |
| A Go package for engineering organisms. |
| Edinburgh-Genome-Foundry/DnaFeaturesViewer |
500 |
|
0 |
22 |
over 2 years ago |
30 |
November 01, 2023 |
31 |
mit |
Python |
| :eye: Python library to plot DNA sequence features (e.g. from Genbank files) |
| mdshw5/pyfaidx |
427 |
|
103 |
119 |
about 2 years ago |
86 |
September 22, 2023 |
14 |
other |
Python |
| Efficient pythonic random access to fasta subsequences |
| FelixKrueger/Bismark |
335 |
|
0 |
0 |
over 2 years ago |
0 |
|
2 |
gpl-3.0 |
HTML |
| A tool to map bisulfite converted sequence reads and determine cytosine methylation states |
