| mdshw5/pyfaidx |
427 |
|
103 |
119 |
about 2 years ago |
86 |
September 22, 2023 |
14 |
other |
Python |
| Efficient pythonic random access to fasta subsequences |
| spacegraphcats/spacegraphcats |
112 |
|
0 |
0 |
over 2 years ago |
15 |
December 04, 2022 |
115 |
other |
Standard ML |
| Indexing & querying large assembly graphs -- in space, no one can hear you miao! |
| refresh-bio/kmer-db |
68 |
|
0 |
0 |
about 3 years ago |
0 |
|
4 |
gpl-3.0 |
C++ |
| Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.). |
| karel-brinda/mof-search |
18 |
|
0 |
0 |
over 2 years ago |
0 |
|
8 |
other |
Python |
| BLAST-like search across all pre-2019 bacteria on ordinary laptop and desktop computers within a few hours |
| bioforensics/rsidx |
12 |
|
0 |
0 |
over 2 years ago |
0 |
|
1 |
other |
Python |
| Library for indexing VCF files for random access searches by rsID |
| genouest/biomaj |
12 |
|
0 |
0 |
over 2 years ago |
0 |
|
22 |
agpl-3.0 |
Python |
| BioMAJ |
| gmiaslab/mathiomica |
11 |
|
0 |
0 |
over 5 years ago |
0 |
|
0 |
other |
Mathematica |
| MathIOmica is a Mathematica package for omics data analyses |
| dfguan/deSPI |
8 |
|
0 |
0 |
over 5 years ago |
0 |
|
1 |
apache-2.0 |
C++ |
| fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing |
| karel-brinda/MiniPhy |
7 |
|
0 |
0 |
over 2 years ago |
0 |
|
7 |
other |
Python |
| Phylogenetic compression of extremely large genome collections [661k โ๐๐.๐๐๐, BIGSIdata โ๐๐ ๐๐] |
