| nextflow-io/nextflow |
2,447 |
|
0 |
16 |
about 2 years ago |
250 |
November 24, 2023 |
336 |
apache-2.0 |
Groovy |
| A DSL for data-driven computational pipelines |
| broadinstitute/cromwell |
944 |
|
0 |
0 |
about 2 years ago |
37 |
May 18, 2022 |
762 |
bsd-3-clause |
Scala |
| Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments |
| BioContainers/containers |
621 |
|
0 |
0 |
about 2 years ago |
0 |
|
39 |
apache-2.0 |
Dockerfile |
| Bioinformatics containers |
| insitro/redun |
464 |
|
0 |
1 |
over 2 years ago |
18 |
November 12, 2023 |
28 |
apache-2.0 |
Python |
| Yet another redundant workflow engine |
| arvados/arvados |
354 |
|
0 |
0 |
about 2 years ago |
9 |
September 21, 2023 |
13 |
other |
Go |
| An open source platform for managing and analyzing biomedical big data |
| pharmai/plip |
320 |
|
2 |
1 |
over 2 years ago |
25 |
August 18, 2023 |
34 |
gpl-2.0 |
Python |
| Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294 |
| deeptools/HiCExplorer |
197 |
|
0 |
0 |
over 2 years ago |
0 |
|
107 |
gpl-3.0 |
Python |
| HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data. |
| StaPH-B/docker-builds |
158 |
|
0 |
0 |
about 2 years ago |
0 |
|
55 |
gpl-3.0 |
HTML |
| :package: :whale: Dockerfiles and documentation on tools for public health bioinformatics |
| brentp/hts-nim |
151 |
|
0 |
0 |
over 2 years ago |
0 |
February 01, 2022 |
4 |
mit |
Nim |
| nim wrapper for htslib for parsing genomics data files |
| SciLifeLab/Sarek |
126 |
|
0 |
0 |
about 6 years ago |
0 |
|
|
mit |
Nextflow |
| Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing |
