Seg3d Alternatives

Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute.
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Alternatives To SCIInstitute/Seg3D
Project Name Stars Downloads Repos Using This Packages Using This Most Recent Commit Total Releases Latest Release Open Issues License Language
JunMa11/MICCAI-OpenSourcePapers 959 0 0 over 2 years ago 0 0 apache-2.0
MICCAI 2019-2023 Open Source Papers
zsdonghao/u-net-brain-tumor 351 0 0 over 6 years ago 0 42 Python
U-Net Brain Tumor Segmentation
google/ffn 289 0 0 about 2 years ago 0 16 apache-2.0 Python
Flood-Filling Networks for instance segmentation in 3d volumes.
Visceral-Project/EvaluateSegmentation 247 0 0 over 4 years ago 0 12 apache-2.0 C++
A program to evaluate the quality of image segmentations.
seung-lab/cloud-volume 120 30 45 over 2 years ago 370 March 17, 2026 83 bsd-3-clause Python
Read and write Neuroglancer datasets programmatically.
SCIInstitute/Seg3D 97 0 0 about 3 years ago 0 133 C++
Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute.
navis-org/navis 76 0 8 about 2 years ago 32 July 28, 2023 37 gpl-3.0 Python
Python library for analysis of neuroanatomical data.
ai-med/quickNAT_pytorch 75 0 0 over 5 years ago 3 July 03, 2018 6 mit Python
PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty
janelia-flyem/gala 59 0 0 about 5 years ago 14 March 03, 2022 16 bsd-3-clause Python
Automatic segmentation of electron microscopy volumes
seung-lab/chunkflow 47 0 0 over 2 years ago 40 September 08, 2022 14 apache-2.0 Python
Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation
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