| broadinstitute/cromwell |
944 |
|
0 |
0 |
about 2 years ago |
37 |
May 18, 2022 |
762 |
bsd-3-clause |
Scala |
| Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments |
| arvados/arvados |
354 |
|
0 |
0 |
about 2 years ago |
9 |
September 21, 2023 |
13 |
other |
Go |
| An open source platform for managing and analyzing biomedical big data |
| common-workflow-language/cwltool |
314 |
|
158 |
38 |
about 2 years ago |
430 |
December 07, 2023 |
458 |
apache-2.0 |
Python |
| Common Workflow Language reference implementation |
| dockstore/dockstore |
113 |
|
0 |
0 |
about 2 years ago |
0 |
|
518 |
apache-2.0 |
Java |
| Our VM/Docker sharing infrastructure and management component |
| genome/analysis-workflows |
99 |
|
0 |
0 |
almost 3 years ago |
0 |
|
89 |
mit |
Common Workflow Language |
| Open workflow definitions for genomic analysis from MGI at WUSM. |
| rabix/bunny |
70 |
|
0 |
0 |
about 7 years ago |
0 |
|
72 |
apache-2.0 |
Common Workflow Language |
| [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0 |
| 4dn-dcic/tibanna |
68 |
|
0 |
1 |
over 2 years ago |
280 |
October 06, 2023 |
25 |
mit |
Python |
| Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command. |
| common-workflow-language/cwlviewer |
40 |
|
0 |
0 |
about 2 years ago |
0 |
|
62 |
apache-2.0 |
Java |
| A web application to view and share Common Workflow Language workflows |
| stjudecloud/workflows |
28 |
|
0 |
0 |
over 2 years ago |
0 |
|
9 |
mit |
WDL |
| Bioinformatics workflows developed for and used on the St. Jude Cloud project. |
| otiai10/hotsub |
23 |
|
0 |
0 |
over 7 years ago |
22 |
November 14, 2018 |
11 |
gpl-3.0 |
Go |
| Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources |
