| jiarong/VirSorter2 |
143 |
|
0 |
0 |
almost 3 years ago |
0 |
|
75 |
gpl-2.0 |
Python |
| customizable pipeline to identify viral sequences from (meta)genomic data |
| nf-core/viralrecon |
101 |
|
0 |
0 |
over 2 years ago |
0 |
|
27 |
mit |
Nextflow |
| Assembly and intrahost/low-frequency variant calling for viral samples |
| EBI-Metagenomics/emg-viral-pipeline |
98 |
|
0 |
0 |
over 2 years ago |
0 |
|
19 |
apache-2.0 |
Python |
| VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies |
| MaayanLab/Zika-RNAseq-Pipeline |
73 |
|
0 |
0 |
over 6 years ago |
0 |
|
5 |
|
Jupyter Notebook |
| An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study |
| keylabivdc/VIP |
22 |
|
0 |
0 |
about 9 years ago |
0 |
|
9 |
|
Perl |
| viromelab/tracespipe |
16 |
|
0 |
0 |
almost 3 years ago |
0 |
|
0 |
gpl-3.0 |
Shell |
| Reconstruction and analysis of viral and host genomes at multi-organ level |
| sejmodha/MetaViC |
15 |
|
0 |
0 |
over 6 years ago |
0 |
|
0 |
gpl-3.0 |
Shell |
| Virus metagenomic pipeline for unknown host or in absence of a host genome |
| cfe-lab/MiCall |
14 |
|
0 |
0 |
over 2 years ago |
0 |
|
141 |
agpl-3.0 |
Python |
| Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C |
| blab/zika-seq |
12 |
|
0 |
0 |
over 6 years ago |
0 |
|
6 |
|
Python |
| Pipelines to do MinION sequencing of Zika virus |
| nf-core/vipr |
10 |
|
0 |
0 |
about 6 years ago |
0 |
|
18 |
mit |
Nextflow |
| Assembly and intrahost / low-frequency variant calling for viral samples |
