Sourmash Alternatives

Quickly search, compare, and analyze genomic and metagenomic data sets.
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Alternatives To sourmash-bio/sourmash
Project Name Stars Downloads Repos Using This Packages Using This Most Recent Commit Total Releases Latest Release Open Issues License Language
Developer-Y/cs-video-courses 62,887 0 0 about 2 years ago 0 0
List of Computer Science courses with video lectures.
plotly/dash 19,976 804 639 about 2 years ago 174 November 28, 2023 815 mit Python
Data Apps & Dashboards for Python. No JavaScript Required.
biopython/biopython 3,918 1,465 1,373 about 2 years ago 58 February 13, 2023 545 other Python
Official git repository for Biopython (originally converted from CVS)
google/deepvariant 2,978 0 0 over 2 years ago 0 8 bsd-3-clause Python
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
seandavi/awesome-single-cell 2,784 0 0 over 2 years ago 0 11 mit
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
danielecook/Awesome-Bioinformatics 2,505 0 0 over 2 years ago 0 9
A curated list of awesome Bioinformatics libraries and software.
nextflow-io/nextflow 2,447 0 16 about 2 years ago 250 November 24, 2023 336 apache-2.0 Groovy
A DSL for data-driven computational pipelines
stephenturner/oneliners 1,705 0 0 almost 3 years ago 0 4
Useful bash one-liners for bioinformatics.
scverse/scanpy 1,682 29 440 about 2 years ago 77 October 31, 2023 546 bsd-3-clause Python
Single-cell analysis in Python. Scales to >1M cells.
lh3/minimap2 1,613 8 32 about 2 years ago 27 December 26, 2021 154 other C
A versatile pairwise aligner for genomic and spliced nucleotide sequences
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