| google/deepvariant |
2,978 |
|
0 |
0 |
over 2 years ago |
0 |
|
8 |
bsd-3-clause |
Python |
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. |
| broadinstitute/gatk |
1,549 |
|
0 |
2 |
about 2 years ago |
46 |
March 16, 2023 |
1,299 |
other |
Java |
| Official code repository for GATK versions 4 and up |
| hail-is/hail |
905 |
|
0 |
17 |
about 2 years ago |
146 |
October 30, 2023 |
211 |
mit |
Python |
| Cloud-native genomic dataframes and batch computing |
| kblin/ncbi-genome-download |
784 |
|
2 |
6 |
over 2 years ago |
25 |
July 28, 2023 |
38 |
apache-2.0 |
Python |
| Scripts to download genomes from the NCBI FTP servers |
| tanghaibao/jcvi |
650 |
|
1 |
1 |
over 2 years ago |
97 |
August 30, 2023 |
41 |
bsd-2-clause |
Python |
| Python library to facilitate genome assembly, annotation, and comparative genomics |
| BenLangmead/bowtie2 |
594 |
|
0 |
0 |
about 2 years ago |
0 |
|
143 |
gpl-3.0 |
C++ |
| A fast and sensitive gapped read aligner |
| jts/nanopolish |
496 |
|
0 |
0 |
over 2 years ago |
0 |
|
60 |
mit |
C++ |
| Signal-level algorithms for MinION data |
| fritzsedlazeck/Sniffles |
479 |
|
0 |
0 |
over 2 years ago |
8 |
July 27, 2023 |
95 |
mit |
Python |
| Structural variation caller using third generation sequencing |
| chhylp123/hifiasm |
443 |
|
0 |
0 |
about 2 years ago |
0 |
|
324 |
mit |
C++ |
| Hifiasm: a haplotype-resolved assembler for accurate Hifi reads |
| voutcn/megahit |
442 |
|
0 |
0 |
about 3 years ago |
0 |
|
78 |
gpl-3.0 |
C++ |
| Ultra-fast and memory-efficient (meta-)genome assembler |
