| brentp/mosdepth |
617 |
|
0 |
0 |
over 2 years ago |
0 |
|
49 |
mit |
Nim |
| fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing |
| wwood/CoverM |
237 |
|
0 |
1 |
about 2 years ago |
9 |
February 24, 2021 |
50 |
gpl-3.0 |
Rust |
| Read coverage calculator for metagenomics |
| KamilSJaron/smudgeplot |
200 |
|
0 |
0 |
about 2 years ago |
0 |
|
19 |
apache-2.0 |
R |
| Inference of ploidy and heterozygosity structure using whole genome sequencing data |
| mbhall88/rasusa |
156 |
|
0 |
0 |
over 2 years ago |
18 |
September 09, 2025 |
3 |
mit |
Rust |
| Randomly subsample sequencing reads to a specified coverage |
| ChristopherWilks/megadepth |
83 |
|
0 |
0 |
over 2 years ago |
0 |
|
7 |
other |
C++ |
| BigWig and BAM utilities |
| josephryan/estimate_genome_size.pl |
53 |
|
0 |
0 |
about 3 years ago |
0 |
|
6 |
|
Perl |
| Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish |
| RCollins13/CNView |
50 |
|
0 |
0 |
over 8 years ago |
0 |
|
3 |
mit |
R |
| Visualization and annotation of CNVs from population-scale whole-genome sequencing data |
| nt246/physalia-lcwgs |
43 |
|
0 |
0 |
over 2 years ago |
0 |
|
0 |
|
HTML |
| Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022 |
| brentp/seqcover |
38 |
|
0 |
0 |
about 5 years ago |
0 |
|
3 |
mit |
Nim |
| seqcover allows user to view coverage for hundreds of genes and dozens of samples |
| diriano/ploidyNGS |
35 |
|
0 |
0 |
about 3 years ago |
0 |
|
1 |
gpl-3.0 |
HTML |
| Explore ploidy levels from NGS data alone |
