| vgteam/vg |
1,022 |
|
0 |
0 |
about 2 years ago |
0 |
|
760 |
other |
C++ |
| tools for working with genome variation graphs |
| chhylp123/hifiasm |
443 |
|
0 |
0 |
about 2 years ago |
0 |
|
324 |
mit |
C++ |
| Hifiasm: a haplotype-resolved assembler for accurate Hifi reads |
| pangenome/pggb |
315 |
|
0 |
0 |
about 2 years ago |
0 |
|
40 |
mit |
Shell |
| the pangenome graph builder |
| labgem/PPanGGOLiN |
191 |
|
0 |
0 |
about 2 years ago |
6 |
July 15, 2018 |
9 |
other |
Python |
| Build a partitioned pangenome graph from microbial genomes |
| ekimb/rust-mdbg |
149 |
|
0 |
0 |
over 3 years ago |
0 |
|
1 |
mit |
Rust |
| minimizer-space de Bruijn graphs (mdBG) for whole genome assembly |
| princeton-vl/px2graph |
113 |
|
0 |
0 |
about 8 years ago |
0 |
|
8 |
bsd-3-clause |
Python |
| Training code for "Pixels to Graphs by Associative Embedding" |
| bcgsc/arcs |
86 |
|
0 |
0 |
over 2 years ago |
0 |
|
2 |
gpl-3.0 |
C++ |
| 🌈Scaffold genome sequence assemblies using linked or long read sequencing data |
| cjlee112/pygr |
84 |
|
0 |
0 |
over 10 years ago |
0 |
|
4 |
bsd-3-clause |
Python |
| Python graph database framework for bioinformatics |
| MoMI-G/MoMI-G |
81 |
|
0 |
0 |
over 2 years ago |
0 |
|
9 |
mit |
TypeScript |
| Modular Multi-scale Integrated Genome Graph Browser |
| GATB/minia |
65 |
|
0 |
0 |
over 2 years ago |
0 |
|
6 |
agpl-3.0 |
C++ |
| Minia is a short-read assembler based on a de Bruijn graph |
