| franciscozorrilla/metaGEM |
155 |
|
0 |
0 |
over 2 years ago |
0 |
|
10 |
mit |
Python |
| :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data |
| cdanielmachado/carveme |
117 |
|
1 |
2 |
over 2 years ago |
22 |
September 12, 2025 |
33 |
other |
Python |
| CarveMe: genome-scale metabolic model reconstruction |
| SysBioChalmers/RAVEN |
87 |
|
0 |
0 |
over 2 years ago |
0 |
|
7 |
other |
MATLAB |
| The RAVEN Toolbox for genome scale model reconstruction, curation and analysis. |
| he-dhamo/simsg |
51 |
|
0 |
0 |
almost 4 years ago |
0 |
|
2 |
apache-2.0 |
Python |
| Semantic Image Manipulation using Scene Graphs (CVPR 2020) |
| Magdoll/Cogent |
50 |
|
0 |
0 |
over 4 years ago |
0 |
|
14 |
bsd-3-clause-clear |
Python |
| Coding Genome Reconstruction using Iso-Seq data |
| DyogenIBENS/Agora |
37 |
|
0 |
0 |
about 3 years ago |
0 |
|
3 |
other |
Python |
| Algorithm For Gene Order Reconstruction in Ancestors |
| resendislab/corda |
20 |
|
0 |
0 |
over 2 years ago |
14 |
March 14, 2018 |
4 |
mit |
Python |
| An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al |
| esaskar/CoReCo |
13 |
|
0 |
0 |
about 8 years ago |
0 |
|
2 |
|
Python |
| Computational method for Comparative ReConstruction of genome-scale metabolic networks |
| VirtualMetabolicHuman/AGORA |
11 |
|
0 |
0 |
over 5 years ago |
0 |
|
3 |
|
|
| The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gut microbes through the use of issues. Please note that pull requests will be automatically closed. |
| johnlees/which_tree |
8 |
|
0 |
0 |
almost 8 years ago |
0 |
|
0 |
gpl-2.0 |
R |
| Testing of phylogenetic inference methods |
