| vgteam/vg |
1,022 |
|
0 |
0 |
about 2 years ago |
0 |
|
760 |
other |
C++ |
| tools for working with genome variation graphs |
| broadinstitute/picard |
914 |
|
17 |
12 |
about 2 years ago |
176 |
November 14, 2023 |
224 |
mit |
Java |
| A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. |
| hail-is/hail |
905 |
|
0 |
17 |
about 2 years ago |
146 |
October 30, 2023 |
211 |
mit |
Python |
| Cloud-native genomic dataframes and batch computing |
| samtools/htslib |
744 |
|
0 |
1 |
about 2 years ago |
11 |
June 14, 2023 |
160 |
other |
C |
| C library for high-throughput sequencing data formats |
| google/nucleus |
675 |
|
0 |
2 |
over 4 years ago |
18 |
August 31, 2021 |
1 |
other |
C++ |
| Python and C++ code for reading and writing genomics data. |
| jeroendesloovere/vcard |
519 |
|
65 |
10 |
about 2 years ago |
30 |
September 07, 2023 |
59 |
mit |
PHP |
| This vCard PHP library can easily parse or generate/export vCards as .vcf |
| jts/nanopolish |
496 |
|
0 |
0 |
over 2 years ago |
0 |
|
60 |
mit |
C++ |
| Signal-level algorithms for MinION data |
| ryanlayer/samplot |
458 |
|
0 |
0 |
over 2 years ago |
3 |
October 11, 2020 |
42 |
mit |
Python |
| Plot structural variant signals from many BAMs and CRAMs |
| vcftools/vcftools |
415 |
|
0 |
0 |
about 3 years ago |
0 |
|
100 |
lgpl-3.0 |
C++ |
| A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project. |
| tseemann/snippy |
408 |
|
0 |
0 |
over 2 years ago |
0 |
|
179 |
gpl-2.0 |
Perl |
| :scissors: :zap: Rapid haploid variant calling and core genome alignment |
