| nextflow-io/nextflow |
2,447 |
|
0 |
16 |
about 2 years ago |
250 |
November 24, 2023 |
336 |
apache-2.0 |
Groovy |
| A DSL for data-driven computational pipelines |
| nf-core/sarek |
299 |
|
0 |
0 |
about 2 years ago |
0 |
|
180 |
mit |
Nextflow |
| Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing |
| neuhausi/canvasXpress |
282 |
|
0 |
4 |
about 2 years ago |
43 |
November 08, 2023 |
7 |
|
R |
| CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities. |
| vanheeringen-lab/seq2science |
132 |
|
0 |
0 |
over 2 years ago |
0 |
|
18 |
mit |
Python |
| Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data. |
| SciLifeLab/Sarek |
126 |
|
0 |
0 |
about 6 years ago |
0 |
|
|
mit |
Nextflow |
| Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing |
| panoptes-organization/panoptes |
59 |
|
0 |
0 |
over 2 years ago |
5 |
August 07, 2023 |
23 |
mit |
CSS |
| Monitor computational workflows in real time |
| cthoyt/chembl-downloader |
55 |
|
0 |
0 |
about 2 years ago |
0 |
|
2 |
mit |
Jupyter Notebook |
| Write reproducible code for getting and processing ChEMBL |
| genepattern/genepattern-notebook |
41 |
|
2 |
1 |
over 2 years ago |
63 |
November 03, 2023 |
0 |
bsd-3-clause |
Python |
| Platform for integrating genomic analysis with Jupyter Notebooks. |
| fmalmeida/ngs-preprocess |
23 |
|
0 |
0 |
about 2 years ago |
0 |
|
3 |
gpl-3.0 |
Nextflow |
| A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies |
| bschiffthaler/kogia |
22 |
|
0 |
0 |
over 2 years ago |
0 |
|
0 |
|
Dockerfile |
| Docker containers for bioinformatics with a small footprint |
