| ay-lab/fithic |
57 |
|
0 |
1 |
over 3 years ago |
22 |
February 01, 2022 |
18 |
mit |
Python |
| Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C. |
| tariks/peakachu |
42 |
|
0 |
0 |
over 2 years ago |
11 |
November 28, 2022 |
8 |
mit |
Python |
| Genome-wide contact analysis using sklearn |
| jmschrei/rambutan |
20 |
|
0 |
0 |
over 7 years ago |
0 |
|
0 |
mit |
Jupyter Notebook |
| Prediction of the 3D structure of the genome through statistically significant Hi-C contacts. |
| kundajelab/genomedisco |
18 |
|
0 |
0 |
almost 8 years ago |
0 |
|
1 |
|
Jupyter Notebook |
| Software for comparing contact maps from HiC, CaptureC and other 3D genome data. |
| koszullab/GRAAL |
13 |
|
0 |
0 |
about 6 years ago |
0 |
|
8 |
|
Python |
| (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-quality genome assembly using chromosomal contact data), also Marie-Nelly et al., 2013, PhD thesis (https://www.theses.fr/2013PA066714) |
| tjs23/nuc_processing |
11 |
|
0 |
0 |
about 3 years ago |
0 |
|
2 |
lgpl-3.0 |
Python |
| Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools |
| TGAC/TGACBrowser |
10 |
|
0 |
0 |
over 5 years ago |
0 |
|
2 |
|
JavaScript |
| TGAC's Genome Browser |
| theboocock/OtagoGalaxy |
5 |
|
0 |
0 |
almost 12 years ago |
0 |
|
5 |
|
Perl |
| 1000 genomes and Merriman Lab Galaxy |
| BDM-Lab/MOGEN |
5 |
|
0 |
0 |
about 8 years ago |
0 |
|
2 |
gpl-3.0 |
Java |
| The software for modeling the 3D structure of a genome using Hi-C chromosome conformation capturing data |
