| nextflow-io/nextflow |
2,447 |
|
0 |
16 |
about 2 years ago |
250 |
November 24, 2023 |
336 |
apache-2.0 |
Groovy |
| A DSL for data-driven computational pipelines |
| grailbio/reflow |
946 |
|
0 |
0 |
over 2 years ago |
2 |
March 04, 2021 |
28 |
apache-2.0 |
Go |
| A language and runtime for distributed, incremental data processing in the cloud |
| broadinstitute/cromwell |
944 |
|
0 |
0 |
about 2 years ago |
37 |
May 18, 2022 |
762 |
bsd-3-clause |
Scala |
| Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments |
| openwdl/wdl |
706 |
|
8 |
0 |
about 2 years ago |
20 |
January 25, 2016 |
91 |
bsd-3-clause |
|
| Workflow Description Language - Specification and Implementations |
| arvados/arvados |
354 |
|
0 |
0 |
about 2 years ago |
9 |
September 21, 2023 |
13 |
other |
Go |
| An open source platform for managing and analyzing biomedical big data |
| lynnlangit/gcp-essentials |
208 |
|
0 |
0 |
about 2 years ago |
0 |
|
0 |
apache-2.0 |
Jupyter Notebook |
| Sample code and notes for my GCP courses on LinkedIn Learning |
| lynnlangit/gcp-for-bioinformatics |
178 |
|
0 |
0 |
over 2 years ago |
0 |
|
1 |
apache-2.0 |
Jupyter Notebook |
| GCP for Bioinformatics Researchers |
| MaayanLab/biojupies |
94 |
|
0 |
0 |
about 4 years ago |
0 |
|
67 |
other |
HTML |
| Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface. |
| flow-r/flowr |
75 |
|
2 |
0 |
about 5 years ago |
7 |
March 02, 2021 |
6 |
other |
R |
| Robust and efficient workflows using a simple language agnostic approach |
| 4dn-dcic/tibanna |
68 |
|
0 |
1 |
over 2 years ago |
280 |
October 06, 2023 |
25 |
mit |
Python |
| Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command. |
