Varnote Alternatives

Fast and scalable variant annotation tool
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Alternatives To mulinlab/VarNote
Project Name Stars Downloads Repos Using This Packages Using This Most Recent Commit Total Releases Latest Release Open Issues License Language
jerryji1993/DNABERT 471 0 0 over 2 years ago 0 60 apache-2.0 Python
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
eggnogdb/eggnog-mapper 469 0 0 over 2 years ago 0 70 agpl-3.0 Python
Fast genome-wide functional annotation through orthology assignment
xihaoli/STAAR 81 0 0 about 2 years ago 0 0 gpl-3.0 C++
An R package for performing STAAR procedure in whole-genome sequencing studies
qiyunzhu/woltka 58 0 0 over 2 years ago 4 December 26, 2022 46 bsd-3-clause Python
Woltka: a versatile meta'omic data classifier
joepickrell/fgwas 47 0 0 over 7 years ago 0 8 gpl-2.0 C++
Functional genomics and genome-wide association studies
legumeinfo/gcv 32 0 0 over 2 years ago 0 85 apache-2.0 TypeScript
Federating genomes with love (and synteny derived from functional annotations)
mulinlab/VarNote 23 0 0 almost 4 years ago 0 3 bsd-3-clause Java
Fast and scalable variant annotation tool
ConesaLab/tappAS 13 0 0 about 3 years ago 0 11 gpl-3.0 Java
This repository contains the source code for the tappAS application. See README for details.
kernco/functional-annotation 9 0 0 about 4 years ago 0 3 Python
Pipeline for functional annotation of genomes by integrating data from RNA-seq, ChIP-seq, DNase-seq, etc.
functional-dark-side/functional-dark-side.github.io 7 0 0 about 3 years ago 0 0 apache-2.0 R
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