| broadinstitute/gatk |
1,549 |
|
0 |
2 |
about 2 years ago |
46 |
March 16, 2023 |
1,299 |
other |
Java |
| Official code repository for GATK versions 4 and up |
| bigdatagenomics/adam |
966 |
|
20 |
17 |
about 2 years ago |
14 |
December 16, 2020 |
35 |
apache-2.0 |
Scala |
| ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed. |
| projectglow/glow |
251 |
|
0 |
1 |
about 2 years ago |
8 |
June 23, 2020 |
73 |
apache-2.0 |
Scala |
| An open-source toolkit for large-scale genomic analysis |
| broadinstitute/seqr |
158 |
|
0 |
0 |
about 2 years ago |
0 |
|
60 |
agpl-3.0 |
Python |
| web-based analysis tool for rare disease genomics |
| GenomicsDB/GenomicsDB |
88 |
|
0 |
2 |
about 2 years ago |
35 |
October 12, 2023 |
28 |
other |
C++ |
| High performance data storage for importing, querying and transforming variants. |
| TileDB-Inc/TileDB-VCF |
79 |
|
0 |
0 |
about 2 years ago |
0 |
|
18 |
mit |
C++ |
| Efficient variant-call data storage and retrieval library using the TileDB storage library. |
| googlegenomics/spark-examples |
75 |
|
0 |
0 |
about 9 years ago |
0 |
|
10 |
apache-2.0 |
Scala |
| Apache Spark jobs such as Principal Coordinate Analysis. |
| biospin/BigBio |
54 |
|
0 |
0 |
about 9 years ago |
0 |
|
3 |
|
Jupyter Notebook |
| gorpipe/gor |
37 |
|
0 |
0 |
over 2 years ago |
0 |
|
7 |
agpl-3.0 |
Java |
| GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine. |
| disq-bio/disq |
31 |
|
0 |
3 |
over 2 years ago |
10 |
February 09, 2021 |
17 |
mit |
Java |
| A library for manipulating bioinformatics sequencing formats in Apache Spark |
