| biopython/biopython |
3,918 |
|
1,465 |
1,373 |
about 2 years ago |
58 |
February 13, 2023 |
545 |
other |
Python |
| Official git repository for Biopython (originally converted from CVS) |
| google/deepvariant |
2,978 |
|
0 |
0 |
over 2 years ago |
0 |
|
8 |
bsd-3-clause |
Python |
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. |
| lh3/minimap2 |
1,613 |
|
8 |
32 |
about 2 years ago |
27 |
December 26, 2021 |
154 |
other |
C |
| A versatile pairwise aligner for genomic and spliced nucleotide sequences |
| broadinstitute/gatk |
1,549 |
|
0 |
2 |
about 2 years ago |
46 |
March 16, 2023 |
1,299 |
other |
Java |
| Official code repository for GATK versions 4 and up |
| lh3/bwa |
1,282 |
|
0 |
0 |
almost 3 years ago |
1 |
March 03, 2021 |
211 |
gpl-3.0 |
C |
| Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment) |
| galaxyproject/galaxy |
1,211 |
|
2 |
23 |
about 2 years ago |
30 |
December 08, 2023 |
2,169 |
other |
Python |
| Data intensive science for everyone. |
| crazyhottommy/getting-started-with-genomics-tools-and-resources |
991 |
|
0 |
0 |
about 2 years ago |
0 |
|
1 |
|
Shell |
| Unix, R and python tools for genomics and data science |
| bigdatagenomics/adam |
966 |
|
20 |
17 |
about 2 years ago |
14 |
December 16, 2020 |
35 |
apache-2.0 |
Scala |
| ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed. |
| hail-is/hail |
905 |
|
0 |
17 |
about 2 years ago |
146 |
October 30, 2023 |
211 |
mit |
Python |
| Cloud-native genomic dataframes and batch computing |
| kblin/ncbi-genome-download |
784 |
|
2 |
6 |
over 2 years ago |
25 |
July 28, 2023 |
38 |
apache-2.0 |
Python |
| Scripts to download genomes from the NCBI FTP servers |
