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The Top 10 Cancer Genomics Open Source Projects

Open source projects categorized as Cancer Genomics
Categories  > Science  > Cancer Genomics
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crazyhottommy/getting-started-with-genomics-tools-and-resources ⭐ 991
Unix, R and python tools for genomics and data science
dependent packages 0 total releases 0 most recent commit about 2 years ago
cBioPortal/cbioportal ⭐ 535
cBioPortal for Cancer Genomics
dependent packages 0 total releases 0 most recent commit about 2 years ago
PoisonAlien/maftools ⭐ 400
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
dependent packages 0 total releases 0 most recent commit about 2 years ago
dellytools/delly ⭐ 384
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
dependent packages 0 total releases 0 most recent commit about 2 years ago
seandavi/awesome-cancer-variant-databases ⭐ 284
A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
dependent packages 0 total releases 0 most recent commit over 2 years ago
eweitz/ideogram ⭐ 265
Chromosome visualization for the web
dependent packages 0 total releases 0 most recent commit about 2 years ago
tariqdaouda/pyGeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
dependent packages 0 total releases 0 most recent commit almost 6 years ago
sigven/pcgr ⭐ 234
Personal Cancer Genome Reporter (PCGR)
dependent packages 0 total releases 0 most recent commit over 2 years ago
brentp/somalier ⭐ 224
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
dependent packages 0 total releases 0 most recent commit over 2 years ago
bioinform/somaticseq ⭐ 185
An ensemble approach to accurately detect somatic mutations using SomaticSeq
dependent packages 0 total releases 0 most recent commit over 2 years ago
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