| dellytools/delly |
384 |
|
0 |
0 |
about 2 years ago |
0 |
|
31 |
bsd-3-clause |
C++ |
| DELLY2: Structural variant discovery by integrated paired-end and split-read analysis |
| tariqdaouda/pyGeno |
242 |
|
1 |
0 |
almost 6 years ago |
18 |
December 15, 2021 |
5 |
apache-2.0 |
Python |
| Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs |
| sigven/pcgr |
234 |
|
0 |
0 |
over 2 years ago |
0 |
|
13 |
mit |
R |
| Personal Cancer Genome Reporter (PCGR) |
| brentp/somalier |
224 |
|
0 |
0 |
over 2 years ago |
0 |
|
42 |
mit |
Nim |
| fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy" |
| bioinform/somaticseq |
185 |
|
0 |
0 |
over 2 years ago |
1 |
May 04, 2022 |
5 |
bsd-2-clause |
Python |
| An ensemble approach to accurately detect somatic mutations using SomaticSeq |
| nygenome/lancet |
145 |
|
0 |
0 |
almost 4 years ago |
0 |
|
0 |
other |
C |
| Microassembly based somatic variant caller for NGS data |
| AlexandrovLab/SigProfilerExtractor |
132 |
|
0 |
3 |
over 2 years ago |
50 |
November 21, 2023 |
1 |
bsd-2-clause |
Python |
| SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting. |
| sigven/cpsr |
50 |
|
0 |
0 |
over 2 years ago |
0 |
|
0 |
other |
R |
| Cancer Predisposition Sequencing Reporter (CPSR) |
| AlexandrovLab/SigProfilerMatrixGeneratorR |
17 |
|
0 |
0 |
about 3 years ago |
0 |
|
2 |
bsd-2-clause |
R |
| R wrapper for utilizing the SigProfilerMatrixGenerator framework |
| ShixiangWang/Variants2Neoantigen |
14 |
|
0 |
0 |
over 6 years ago |
0 |
|
0 |
lgpl-3.0 |
Shell |
| a neoantigen calling pipeline begins from variants record file (MAF) |
