| sanger-pathogens/Artemis |
191 |
|
0 |
0 |
about 3 years ago |
0 |
|
25 |
other |
Java |
| Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation |
| biobakery/kneaddata |
78 |
|
0 |
0 |
almost 3 years ago |
0 |
|
10 |
other |
Python |
| Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments. |
| kjolley/BIGSdb |
53 |
|
0 |
0 |
about 2 years ago |
0 |
|
100 |
other |
Perl |
| Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis. |
| phenopolis/phenopolis |
32 |
|
0 |
0 |
almost 5 years ago |
0 |
|
49 |
mit |
JavaScript |
| An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data |
| arosenfeld/immunedb |
19 |
|
0 |
0 |
over 2 years ago |
32 |
May 26, 2021 |
10 |
other |
Python |
| ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data |
| bioinfo-ut/PlasmidSeeker |
18 |
|
0 |
0 |
about 5 years ago |
0 |
|
1 |
bsd-3-clause |
Perl |
| A k-mer based program for the identification of known plasmids from whole-genome sequencing reads |
| statgenetics/seqspark |
16 |
|
0 |
0 |
over 6 years ago |
0 |
|
7 |
apache-2.0 |
Scala |
| SEQSpark documentation |
| AG-Boerries/MIRACUM-Pipe |
14 |
|
0 |
0 |
over 2 years ago |
0 |
|
3 |
agpl-3.0 |
R |
| Whole exome sequencing pipeline including advanced variant annotation features and automated PDF reporting. |
| sanger-pathogens/mlst_check |
14 |
|
0 |
0 |
over 5 years ago |
13 |
March 03, 2017 |
5 |
gpl-3.0 |
Perl |
| Multilocus sequence typing by blast using the schemes from PubMLST |
| antonisdim/haystac |
12 |
|
0 |
0 |
about 3 years ago |
16 |
August 01, 2022 |
1 |
mit |
Python |
| Code repository for the HAYSTAC pipeline |
