| RWilton/Arioc |
54 |
|
0 |
0 |
over 2 years ago |
0 |
|
0 |
bsd-3-clause |
|
| Arioc: GPU-accelerated DNA short-read alignment |
| CMU-SAFARI/SneakySnake |
44 |
|
0 |
0 |
about 3 years ago |
0 |
|
1 |
gpl-3.0 |
VHDL |
| SneakySnake:snake: is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020. |
| nahmedraja/GASAL2 |
27 |
|
0 |
0 |
over 3 years ago |
0 |
|
8 |
apache-2.0 |
C++ |
| quim0/WFA-GPU |
24 |
|
0 |
0 |
over 2 years ago |
0 |
|
0 |
mit |
C |
| GPU implementation of the Wavefront Alignment Algorithm for global, gap-affine, pairwise sequence alginment |
| rmtheis/mummergpu |
7 |
|
0 |
0 |
over 8 years ago |
0 |
|
1 |
other |
C++ |
| Fork of MUMmerGPU-2.0 that compiles without errors |
| pgngp/swift |
5 |
|
0 |
0 |
over 8 years ago |
0 |
|
0 |
gpl-2.0 |
Cuda |
| GPU-based DNA sequence alignment program using Smith-Waterman |
