| biopython/biopython |
3,918 |
|
1,465 |
1,373 |
about 2 years ago |
58 |
February 13, 2023 |
545 |
other |
Python |
| Official git repository for Biopython (originally converted from CVS) |
| google/deepvariant |
2,978 |
|
0 |
0 |
over 2 years ago |
0 |
|
8 |
bsd-3-clause |
Python |
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. |
| satijalab/seurat |
2,025 |
|
0 |
2 |
about 2 years ago |
16 |
November 13, 2022 |
326 |
other |
R |
| R toolkit for single cell genomics |
| hussius/deeplearning-biology |
1,846 |
|
0 |
0 |
almost 3 years ago |
0 |
|
0 |
|
|
| A list of deep learning implementations in biology |
| lh3/minimap2 |
1,613 |
|
8 |
32 |
about 2 years ago |
27 |
December 26, 2021 |
154 |
other |
C |
| A versatile pairwise aligner for genomic and spliced nucleotide sequences |
| broadinstitute/gatk |
1,549 |
|
0 |
2 |
about 2 years ago |
46 |
March 16, 2023 |
1,299 |
other |
Java |
| Official code repository for GATK versions 4 and up |
| lh3/bwa |
1,282 |
|
0 |
0 |
almost 3 years ago |
1 |
March 03, 2021 |
211 |
gpl-3.0 |
C |
| Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment) |
| materialsproject/pymatgen |
1,254 |
|
135 |
225 |
about 2 years ago |
370 |
November 13, 2023 |
132 |
other |
Python |
| Python Materials Genomics (pymatgen) is a robust materials analysis code that defines classes for structures and molecules with support for many electronic structure codes. It powers the Materials Project. |
| galaxyproject/galaxy |
1,211 |
|
2 |
23 |
about 2 years ago |
30 |
December 08, 2023 |
2,169 |
other |
Python |
| Data intensive science for everyone. |
| greenelab/deep-review |
1,186 |
|
0 |
0 |
over 4 years ago |
0 |
|
422 |
other |
HTML |
| A collaboratively written review paper on deep learning, genomics, and precision medicine |
