| AlexandrovLab/SigProfilerExtractor |
132 |
|
0 |
3 |
over 2 years ago |
50 |
November 21, 2023 |
1 |
bsd-2-clause |
Python |
| SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting. |
| geronimp/enrichM |
60 |
|
0 |
0 |
over 3 years ago |
42 |
September 02, 2022 |
27 |
gpl-3.0 |
Python |
| Toolbox for comparative genomics of MAGs |
| RCollins13/CNView |
50 |
|
0 |
0 |
over 8 years ago |
0 |
|
3 |
mit |
R |
| Visualization and annotation of CNVs from population-scale whole-genome sequencing data |
| sgravel/tracts |
20 |
|
0 |
0 |
over 2 years ago |
0 |
|
16 |
gpl-2.0 |
Python |
| A set of tools for modelling ancestry patterns along the genome. |
| ghzuo/CVTree |
19 |
|
0 |
0 |
over 2 years ago |
0 |
|
3 |
mit |
C++ |
| A whole-genome and alignment-free prokaryotic phylogeny tool |
| carjed/helmsman |
19 |
|
0 |
0 |
over 5 years ago |
0 |
|
3 |
mit |
Python |
| highly-efficient & lightweight mutation signature matrix aggregation |
| estebanpw/chromeister |
16 |
|
0 |
0 |
about 4 years ago |
0 |
|
4 |
gpl-3.0 |
C |
| A dotplot generator for large chromosomes |
| r3fang/SnapTools |
11 |
|
0 |
0 |
about 6 years ago |
22 |
September 04, 2019 |
20 |
apache-2.0 |
Python |
| A module for working with snap files in Python |
| JCVenterInstitute/GGRaSP |
7 |
|
0 |
0 |
over 2 years ago |
0 |
|
1 |
gpl-2.0 |
R |
| c2-d2/disty |
6 |
|
0 |
0 |
over 8 years ago |
0 |
|
7 |
mit |
C++ |
| Disty McMatrixface - compute a distance matrix from a core genome alignment file |
