| sanger-pathogens/assembly-stats |
92 |
|
0 |
0 |
almost 3 years ago |
0 |
|
0 |
other |
C++ |
| Get assembly statistics from FASTA and FASTQ files |
| cogent3/cogent3 |
79 |
|
0 |
2 |
about 2 years ago |
18 |
September 22, 2023 |
35 |
bsd-3-clause |
Python |
| Comparative Genomics Toolkit 3 |
| biospin/BigBio |
54 |
|
0 |
0 |
about 9 years ago |
0 |
|
3 |
|
Jupyter Notebook |
| StoreyLab/reading |
48 |
|
0 |
0 |
over 10 years ago |
0 |
|
0 |
|
|
| A collection of papers and books that Storey Lab members should read and others may find useful |
| pmelsted/KmerStream |
46 |
|
0 |
0 |
about 6 years ago |
0 |
|
6 |
|
C++ |
| Streaming algorithm for computing kmer statistics for massive genomics datasets |
| nullranges/nullranges |
23 |
|
0 |
0 |
over 2 years ago |
0 |
|
3 |
gpl-3.0 |
R |
| Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrap samples of ranges (using the block bootstrap framework of Bickel et al 2010), or set of control ranges that are matched across one or more covariates. |
| thelovelab/fishpond |
22 |
|
0 |
0 |
over 2 years ago |
0 |
|
1 |
|
R |
| Differential expression and allelic analysis, nonparametric statistics |
| simonhmartin/tutorials |
18 |
|
0 |
0 |
about 4 years ago |
0 |
|
0 |
|
|
| Tutorials on evolutionary genomics |
| sanger-tol/genomenote |
16 |
|
0 |
0 |
over 2 years ago |
0 |
|
14 |
mit |
Groovy |
| This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of statistics. |
| mdozmorov/blogs |
16 |
|
0 |
0 |
over 5 years ago |
0 |
|
0 |
mit |
|
| Links to data science, bioinformatics, statistics, and machine learning resources |
