Vsearch Alternatives

Versatile open-source tool for microbiome analysis
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Alternatives To torognes/vsearch
Project Name Stars Downloads Repos Using This Packages Using This Most Recent Commit Total Releases Latest Release Open Issues License Language
soedinglab/MMseqs2 1,164 0 0 about 2 years ago 0 340 gpl-3.0 C
MMseqs2: ultra fast and sensitive search and clustering suite
torognes/vsearch 605 0 0 about 2 years ago 1 March 03, 2021 46 other C++
Versatile open-source tool for microbiome analysis
mhahsler/rBLAST 91 0 0 over 2 years ago 0 9 gpl-3.0 R
Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
biocore/redbiom 42 1 1 over 2 years ago 10 December 20, 2022 23 other Python
Sample search by metadata and features
compomics/peptide-shaker 41 0 0 over 2 years ago 0 32 Java
Interpretation of proteomics identification results
compomics/searchgui 36 0 0 over 2 years ago 0 13 Java
Highly adaptable common interface for proteomics search and de novo engines
Bohdan-Khomtchouk/PubData 21 0 0 over 8 years ago 0 0 Python
Smart search engine for all bioinformatics databases worldwide
desmid/mview 16 0 0 over 5 years ago 0 11 gpl-2.0 Perl
MView extracts and reformats the results of a sequence database search or multiple alignment.
bioforensics/rsidx 12 0 0 over 2 years ago 0 1 other Python
Library for indexing VCF files for random access searches by rsID
incertae-sedis/smof 12 0 2 about 3 years ago 12 July 18, 2022 0 mit Python
Explore and analyze biological sequence data
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