| ababaian/serratus |
219 |
|
0 |
0 |
about 3 years ago |
0 |
|
36 |
gpl-3.0 |
Jupyter Notebook |
| Ultra-deep search for novel viruses |
| cbg-ethz/V-pipe |
119 |
|
0 |
0 |
over 2 years ago |
0 |
|
27 |
apache-2.0 |
Jupyter Notebook |
| V-pipe is a pipeline designed for analysing NGS data of short viral genomes |
| OpenGene/fastv |
56 |
|
0 |
0 |
over 5 years ago |
0 |
|
1 |
mit |
C++ |
| An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19. |
| virtool/virtool |
41 |
|
0 |
0 |
over 2 years ago |
0 |
|
9 |
mit |
Python |
| Viral infection diagnostics using next-generation sequencing |
| sanger-pathogens/iva |
37 |
|
0 |
0 |
about 5 years ago |
16 |
January 25, 2018 |
9 |
gpl-3.0 |
Python |
| de novo virus assembler of Illumina paired reads |
| OpenGene/UniqueKMER |
33 |
|
0 |
0 |
over 3 years ago |
0 |
|
3 |
mit |
C |
| Generate unique KMERs for every contig in a FASTA file |
| prophyle/prophyle |
30 |
|
0 |
0 |
over 2 years ago |
53 |
August 23, 2021 |
41 |
mit |
Python |
| Accurate, resource-frugal and deterministic DNA sequence classifier. |
| yyoshiaki/VIRTUS |
28 |
|
0 |
0 |
about 4 years ago |
0 |
|
4 |
other |
Common Workflow Language |
| A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing. |
| rcs333/VAPiD |
27 |
|
0 |
0 |
almost 5 years ago |
0 |
|
3 |
other |
Shell |
| VAPiD: Viral Annotation and Identification Pipeline |
| ICBI/viGEN |
24 |
|
0 |
0 |
about 3 years ago |
0 |
|
0 |
|
|
| viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data |
