| google/deepvariant |
2,978 |
|
0 |
0 |
over 2 years ago |
0 |
|
8 |
bsd-3-clause |
Python |
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. |
| broadinstitute/gatk |
1,549 |
|
0 |
2 |
about 2 years ago |
46 |
March 16, 2023 |
1,299 |
other |
Java |
| Official code repository for GATK versions 4 and up |
| maxplanck-ie/snakepipes |
359 |
|
0 |
0 |
about 2 years ago |
0 |
|
34 |
mit |
Python |
| Customizable workflows based on snakemake and python for the analysis of NGS data |
| shenlab-sinai/ngsplot |
231 |
|
0 |
0 |
almost 3 years ago |
0 |
|
55 |
other |
R |
| Quick mining and visualization of NGS data by integrating genomic databases |
| epam/NGB |
151 |
|
0 |
0 |
about 2 years ago |
0 |
|
290 |
mit |
Java |
| New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support |
| broadinstitute/viral-ngs |
129 |
|
0 |
0 |
about 6 years ago |
0 |
|
60 |
other |
Python |
| Viral genomics analysis pipelines |
| cbg-ethz/V-pipe |
119 |
|
0 |
0 |
over 2 years ago |
0 |
|
27 |
apache-2.0 |
Jupyter Notebook |
| V-pipe is a pipeline designed for analysing NGS data of short viral genomes |
| 3DGenomes/TADbit |
89 |
|
0 |
0 |
over 3 years ago |
0 |
|
58 |
gpl-3.0 |
Python |
| TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models |
| bergmanlab/mcclintock |
83 |
|
0 |
0 |
over 2 years ago |
0 |
|
6 |
|
Python |
| Meta-pipeline to identify transposable element insertions using next generation sequencing data |
| KHP-Informatics/ngseasy |
76 |
|
0 |
0 |
almost 9 years ago |
0 |
|
9 |
gpl-2.0 |
Shell |
| Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation) |
