| tanghaibao/jcvi |
650 |
|
1 |
1 |
over 2 years ago |
97 |
August 30, 2023 |
41 |
bsd-2-clause |
Python |
| Python library to facilitate genome assembly, annotation, and comparative genomics |
| knausb/vcfR |
225 |
|
25 |
29 |
over 2 years ago |
16 |
December 08, 2023 |
39 |
|
R |
| Tools to work with variant call format files |
| lh3/gfatools |
181 |
|
0 |
0 |
over 2 years ago |
0 |
|
17 |
|
C |
| Tools for manipulating sequence graphs in the GFA and rGFA formats |
| lh3/hickit |
69 |
|
0 |
0 |
about 5 years ago |
0 |
|
10 |
|
C |
| TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C |
| open2c/coolpuppy |
66 |
|
0 |
0 |
over 2 years ago |
23 |
July 11, 2023 |
3 |
mit |
Python |
| A versatile tool to perform pile-up analysis on Hi-C data in .cool format. |
| igordot/msigdbr |
52 |
|
0 |
11 |
over 3 years ago |
7 |
March 30, 2022 |
3 |
other |
R |
| MSigDB gene sets for multiple organisms in a tidy data format |
| aleimba/bac-genomics-scripts |
28 |
|
0 |
0 |
over 6 years ago |
0 |
|
12 |
gpl-3.0 |
Perl |
| Collection of scripts for bacterial genomics |
| maximilianh/ucscBeacon |
10 |
|
0 |
0 |
over 10 years ago |
0 |
|
3 |
|
Python |
| A GA4GH Draft Beacon implementation |
| BioJulia/ReadDatastores.jl |
10 |
|
0 |
0 |
over 2 years ago |
0 |
|
2 |
mit |
Julia |
| Datastores for reads, not your papa's FASTQ files. |
| AllenInstitute/scrattch.io |
7 |
|
0 |
0 |
over 4 years ago |
0 |
|
10 |
other |
R |
| Functions for handling RNA-seq files and formats as input and output for scrattch functions. |
