| hail-is/hail |
905 |
|
0 |
17 |
about 2 years ago |
146 |
October 30, 2023 |
211 |
mit |
Python |
| Cloud-native genomic dataframes and batch computing |
| samtools/htslib |
744 |
|
0 |
1 |
about 2 years ago |
11 |
June 14, 2023 |
160 |
other |
C |
| C library for high-throughput sequencing data formats |
| google/nucleus |
675 |
|
0 |
2 |
over 4 years ago |
18 |
August 31, 2021 |
1 |
other |
C++ |
| Python and C++ code for reading and writing genomics data. |
| jts/nanopolish |
496 |
|
0 |
0 |
over 2 years ago |
0 |
|
60 |
mit |
C++ |
| Signal-level algorithms for MinION data |
| tseemann/snippy |
408 |
|
0 |
0 |
over 2 years ago |
0 |
|
179 |
gpl-2.0 |
Perl |
| :scissors: :zap: Rapid haploid variant calling and core genome alignment |
| brentp/cyvcf2 |
345 |
|
34 |
46 |
about 2 years ago |
90 |
December 11, 2023 |
39 |
mit |
Cython |
| cython + htslib == fast VCF and BCF processing |
| brentp/vcfanno |
334 |
|
0 |
1 |
over 2 years ago |
41 |
November 29, 2022 |
33 |
mit |
Go |
| annotate a VCF with other VCFs/BEDs/tabixed files |
| fritzsedlazeck/SURVIVOR |
299 |
|
0 |
0 |
over 2 years ago |
0 |
|
66 |
mit |
C++ |
| Toolset for SV simulation, comparison and filtering |
| Illumina/hap.py |
283 |
|
0 |
0 |
over 4 years ago |
0 |
|
80 |
other |
C++ |
| Haplotype VCF comparison tools |
| ACEnglish/truvari |
268 |
|
0 |
0 |
about 2 years ago |
23 |
August 07, 2023 |
0 |
mit |
Python |
| Structural variant toolkit for VCFs |
