| ababaian/serratus |
219 |
|
0 |
0 |
about 3 years ago |
0 |
|
36 |
gpl-3.0 |
Jupyter Notebook |
| Ultra-deep search for novel viruses |
| nextstrain/nextclade |
190 |
|
0 |
2 |
about 2 years ago |
52 |
April 27, 2022 |
154 |
mit |
TypeScript |
| Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement |
| cbg-ethz/V-pipe |
119 |
|
0 |
0 |
over 2 years ago |
0 |
|
27 |
apache-2.0 |
Jupyter Notebook |
| V-pipe is a pipeline designed for analysing NGS data of short viral genomes |
| OpenGene/fastv |
56 |
|
0 |
0 |
over 5 years ago |
0 |
|
1 |
mit |
C++ |
| An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19. |
| virtool/virtool |
41 |
|
0 |
0 |
about 2 years ago |
0 |
|
9 |
mit |
Python |
| Viral infection diagnostics using next-generation sequencing |
| sanger-pathogens/iva |
37 |
|
0 |
0 |
about 5 years ago |
16 |
January 25, 2018 |
9 |
gpl-3.0 |
Python |
| de novo virus assembler of Illumina paired reads |
| OpenGene/UniqueKMER |
33 |
|
0 |
0 |
over 3 years ago |
0 |
|
3 |
mit |
C |
| Generate unique KMERs for every contig in a FASTA file |
| jonas-fuchs/varVAMP |
15 |
|
0 |
0 |
about 2 years ago |
15 |
November 20, 2023 |
0 |
gpl-3.0 |
Python |
| Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses. |
| blab/zika-seq |
12 |
|
0 |
0 |
over 6 years ago |
0 |
|
6 |
|
Python |
| Pipelines to do MinION sequencing of Zika virus |
| josephhughes/DiversiTools |
10 |
|
0 |
0 |
almost 3 years ago |
0 |
|
6 |
gpl-3.0 |
Perl |
| Tool for analysing viral diversity from High Throughput Sequencing |
