| google/deepvariant |
2,978 |
|
0 |
0 |
over 2 years ago |
0 |
|
8 |
bsd-3-clause |
Python |
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. |
| OpenGene/fastp |
1,602 |
|
0 |
0 |
over 2 years ago |
1 |
December 15, 2021 |
309 |
mit |
C++ |
| An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...) |
| broadinstitute/gatk |
1,549 |
|
0 |
2 |
about 2 years ago |
46 |
March 16, 2023 |
1,299 |
other |
Java |
| Official code repository for GATK versions 4 and up |
| samtools/samtools |
1,496 |
|
0 |
0 |
about 2 years ago |
0 |
|
180 |
other |
C |
| Tools (written in C using htslib) for manipulating next-generation sequencing data |
| nextstrain/ncov |
1,348 |
|
0 |
0 |
about 2 years ago |
0 |
|
82 |
mit |
Python |
| Nextstrain build for novel coronavirus SARS-CoV-2 |
| galaxyproject/galaxy |
1,211 |
|
2 |
23 |
about 2 years ago |
30 |
December 08, 2023 |
2,169 |
other |
Python |
| Data intensive science for everyone. |
| crazyhottommy/getting-started-with-genomics-tools-and-resources |
991 |
|
0 |
0 |
about 2 years ago |
0 |
|
1 |
|
Shell |
| Unix, R and python tools for genomics and data science |
| bigdatagenomics/adam |
966 |
|
20 |
17 |
about 2 years ago |
14 |
December 16, 2020 |
35 |
apache-2.0 |
Scala |
| ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed. |
| broadinstitute/picard |
914 |
|
17 |
12 |
about 2 years ago |
176 |
November 14, 2023 |
224 |
mit |
Java |
| A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. |
| ablab/spades |
903 |
|
0 |
0 |
2 months ago |
0 |
|
183 |
other |
C++ |
| SPAdes Genome Assembler |
