| galaxyproject/galaxy |
1,211 |
|
2 |
23 |
about 2 years ago |
30 |
December 08, 2023 |
2,169 |
other |
Python |
| Data intensive science for everyone. |
| aidenlab/juicer |
313 |
|
0 |
0 |
about 3 years ago |
0 |
|
40 |
mit |
Shell |
| A One-Click System for Analyzing Loop-Resolution Hi-C Experiments |
| ugeneunipro/ugene |
190 |
|
0 |
0 |
about 2 years ago |
0 |
|
6 |
gpl-2.0 |
C++ |
| UGENE is free open-source cross-platform bioinformatics software |
| epam/cloud-pipeline |
137 |
|
0 |
0 |
about 2 years ago |
0 |
|
840 |
apache-2.0 |
Java |
| Cloud agnostic genomics analysis, scientific computation and storage platform |
| sequana/sequana |
136 |
|
6 |
11 |
over 2 years ago |
111 |
March 01, 2026 |
12 |
bsd-3-clause |
Jupyter Notebook |
| Sequana: a set of Snakemake NGS pipelines |
| vanheeringen-lab/seq2science |
132 |
|
0 |
0 |
over 2 years ago |
0 |
|
18 |
mit |
Python |
| Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data. |
| broadinstitute/viral-ngs |
129 |
|
0 |
0 |
about 6 years ago |
0 |
|
60 |
other |
Python |
| Viral genomics analysis pipelines |
| YaqiangCao/cLoops |
99 |
|
0 |
0 |
almost 4 years ago |
0 |
|
0 |
mit |
Python |
| Accurate and flexible loops calling tool for 3D genomic data. |
| CRG-CNAG/CalliNGS-NF |
76 |
|
0 |
0 |
over 4 years ago |
0 |
|
5 |
mpl-2.0 |
Nextflow |
| GATK RNA-Seq Variant Calling in Nextflow |
| KHP-Informatics/ngseasy |
76 |
|
0 |
0 |
almost 9 years ago |
0 |
|
9 |
gpl-2.0 |
Shell |
| Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation) |
