| google/deepvariant |
2,978 |
|
0 |
0 |
over 2 years ago |
0 |
|
8 |
bsd-3-clause |
Python |
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. |
| broadinstitute/gatk |
1,549 |
|
0 |
2 |
about 2 years ago |
46 |
March 16, 2023 |
1,299 |
other |
Java |
| Official code repository for GATK versions 4 and up |
| galaxyproject/galaxy |
1,211 |
|
2 |
23 |
about 2 years ago |
30 |
December 08, 2023 |
2,169 |
other |
Python |
| Data intensive science for everyone. |
| deeptools/deepTools |
624 |
|
0 |
0 |
over 2 years ago |
0 |
|
127 |
other |
Python |
| Tools to process and analyze deep sequencing data. |
| flowhub-team/awesome-omics |
536 |
|
0 |
0 |
about 2 years ago |
0 |
|
0 |
mit |
|
| A collection of awesome things regarding all omics. |
| lindenb/jvarkit |
440 |
|
0 |
0 |
over 2 years ago |
0 |
|
52 |
other |
Java |
| Java utilities for Bioinformatics |
| aidenlab/juicer |
313 |
|
0 |
0 |
about 3 years ago |
0 |
|
40 |
mit |
Shell |
| A One-Click System for Analyzing Loop-Resolution Hi-C Experiments |
| fulcrumgenomics/fgbio |
292 |
|
0 |
0 |
about 2 years ago |
16 |
May 16, 2023 |
110 |
mit |
Scala |
| Tools for working with genomic and high throughput sequencing data. |
| samtools/htsjdk |
271 |
|
170 |
87 |
over 2 years ago |
78 |
October 13, 2023 |
303 |
|
Java |
| A Java API for high-throughput sequencing data (HTS) formats. |
| ngless-toolkit/ngless |
141 |
|
0 |
0 |
about 3 years ago |
5 |
September 19, 2022 |
35 |
other |
Haskell |
| NGLess: NGS with less work |
