| biopython/biopython |
3,918 |
|
1,465 |
1,373 |
about 2 years ago |
58 |
February 13, 2023 |
545 |
other |
Python |
| Official git repository for Biopython (originally converted from CVS) |
| lh3/minimap2 |
1,613 |
|
8 |
32 |
about 2 years ago |
27 |
December 26, 2021 |
154 |
other |
C |
| A versatile pairwise aligner for genomic and spliced nucleotide sequences |
| lh3/bwa |
1,282 |
|
0 |
0 |
almost 3 years ago |
1 |
March 03, 2021 |
211 |
gpl-3.0 |
C |
| Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment) |
| tanghaibao/jcvi |
650 |
|
1 |
1 |
over 2 years ago |
97 |
August 30, 2023 |
41 |
bsd-2-clause |
Python |
| Python library to facilitate genome assembly, annotation, and comparative genomics |
| bwa-mem2/bwa-mem2 |
645 |
|
0 |
0 |
over 2 years ago |
0 |
|
81 |
other |
C++ |
| The next version of bwa-mem |
| torognes/vsearch |
605 |
|
0 |
0 |
about 2 years ago |
1 |
March 03, 2021 |
46 |
other |
C++ |
| Versatile open-source tool for microbiome analysis |
| biojava/biojava |
564 |
|
96 |
16 |
about 2 years ago |
56 |
June 02, 2023 |
71 |
lgpl-2.1 |
Java |
| :book::microscope::coffee: BioJava is an open-source project dedicated to providing a Java library for processing biological data. |
| Martinsos/edlib |
421 |
|
7 |
35 |
almost 3 years ago |
20 |
August 20, 2021 |
64 |
mit |
C++ |
| Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance. |
| seqan/seqan3 |
373 |
|
0 |
0 |
about 2 years ago |
0 |
|
24 |
other |
C++ |
| The modern C++ library for sequence analysis. Contains version 3 of the library and API docs. |
| lh3/minigraph |
367 |
|
0 |
0 |
over 2 years ago |
1 |
June 21, 2023 |
44 |
mit |
C |
| Proof-of-concept seq-to-graph mapper and graph generator |
